| TF name | Position | PWM scan score |
| GntR | 224-243 | 15.616 |
| CRP | 226-247 | 13.832 |
| OmpR | 370-389 | 13.630 |
| CytR | 202-241 | 13.529 |
| MelR | 257-274 | 13.047 |
| NagC | 371-393 | 11.474 |
| ArcA | 290-350 | 11.226 |
| DeoR | 252-267 | 10.657 |
| XylR | 241-258 | 10.311 |
| Fis | 294-314 | 9.953 |
| DnaA | 163-171 | 9.566 |
| Lrp | 370-381 | 9.365 |
| NtrC | 298-314 | 9.168 |
| Mlc | 303-325 | 9.050 |
| GadE | 375-394 | 8.822 |
| Rob | 118-138 | 8.709 |
| NarL | 81-87 | 8.353 |
| ArgR | 287-302 | 8.290 |
| TyrR | 242-263 | 8.096 |
| PhoB | 256-275 | 8.080 |
| IHF | 76-88 | 7.987 |
| H-NS | 370-384 | 7.744 |
| Fur | 76-90 | 7.719 |
| FNR | 306-327 | 7.642 |
| GlpR | 26-45 | 7.349 |
| LexA | 285-304 | 7.100 |
| IdnR | 270-285 | 7.098 |
| ArgP | 74-86 | 7.059 |
| PhoP | 66-82 | 6.969 |
| GcvA | 242-270 | 6.952 |
| RcsB | 289-302 | 6.791 |
| MetJ | 165-172 | 6.521 |
| AraC | 285-302 | 6.461 |
| FadR | 185-201 | 6.432 |
| OxyR | 354-398 | 6.234 |
| Nac | 371-385 | 6.224 |
| UlaR | 352-371 | 6.029 |
| GalS | 228-243 | 5.986 |
| GalR | 228-243 | 5.986 |
| MarA | 27-47 | 5.647 |
| FruR | 321-338 | 5.161 |