| TF name | Position | PWM scan score |
| GntR | 110-129 | 10.687 |
| GlpR | 226-245 | 10.406 |
| OmpR | 7-26 | 10.142 |
| NarP | 179-185 | 9.938 |
| RhaS | 236-252 | 9.603 |
| MalT | 350-359 | 9.436 |
| TorR | 98-107 | 9.371 |
| CRP | 364-385 | 8.720 |
| SoxS | 113-130 | 8.298 |
| Rob | 11-31 | 8.185 |
| Lrp | 202-213 | 8.156 |
| CueR | 348-366 | 7.975 |
| GalS | 72-87 | 7.717 |
| GalR | 72-87 | 7.717 |
| RcsB | 149-162 | 7.562 |
| NtrC | 218-234 | 7.412 |
| AraC | 197-214 | 7.176 |
| DnaA | 177-185 | 7.116 |
| Fur | 281-295 | 7.074 |
| NarL | 202-208 | 6.854 |
| IHF | 82-94 | 6.774 |
| FruR | 326-343 | 6.773 |
| GadE | 16-35 | 6.639 |
| FhlA | 352-391 | 6.586 |
| MarA | 111-131 | 6.396 |
| H-NS | 16-30 | 6.381 |
| ArcA | 184-244 | 6.308 |
| MelR | 126-143 | 6.111 |
| ArgR | 70-85 | 5.784 |
| NorR | 85-101 | 5.710 |
| Nac | 216-230 | 5.389 |
| PspF | 321-337 | 5.387 |
| MetJ | 359-366 | 5.316 |
| IdnR | 51-66 | 5.158 |
| Fis | 224-244 | 5.042 |
| FNR | 4-25 | 5.024 |
| NagC | 93-115 | 5.001 |