| TF name | Position | PWM scan score |
| FNR | 120-141 | 11.474 |
| GadE | 54-73 | 11.375 |
| MalT | 320-329 | 9.706 |
| RcsB | 210-223 | 9.393 |
| IHF | 129-141 | 9.376 |
| ArgP | 377-389 | 8.860 |
| AgaR | 103-126 | 8.615 |
| MelR | 363-380 | 8.267 |
| PhoP | 251-267 | 8.135 |
| Lrp | 56-67 | 7.141 |
| Mlc | 162-184 | 6.917 |
| CpxR | 374-388 | 6.907 |
| NarP | 347-353 | 6.558 |
| MetJ | 120-127 | 6.390 |
| DeoR | 52-67 | 6.011 |
| GlpR | 119-138 | 5.963 |
| TorR | 260-269 | 5.759 |
| Nac | 112-126 | 5.600 |
| H-NS | 370-384 | 5.587 |
| RhaS | 258-274 | 5.548 |
| Fis | 20-40 | 5.487 |
| MetR | 262-285 | 5.485 |
| GcvA | 369-397 | 5.471 |
| NorR | 369-385 | 5.189 |
| UxuR | 372-389 | 5.153 |
| DnaA | 374-382 | 5.139 |
| XylR | 350-367 | 5.094 |