| TF name | Position | PWM scan score |
| ArcA | 36-96 | 18.375 |
| Ada | 240-267 | 13.935 |
| IdnR | 248-263 | 12.731 |
| GadE | 333-352 | 11.375 |
| AraC | 247-264 | 10.621 |
| XylR | 236-253 | 10.027 |
| Nac | 50-64 | 9.816 |
| CysB | 42-83 | 8.830 |
| MetR | 53-76 | 8.259 |
| PhoP | 172-188 | 8.139 |
| ArgP | 53-65 | 8.067 |
| GcvA | 57-85 | 8.013 |
| SoxS | 48-65 | 7.841 |
| IHF | 58-70 | 7.833 |
| CRP | 67-88 | 7.498 |
| Lrp | 249-260 | 7.394 |
| LexA | 265-284 | 7.196 |
| FNR | 48-69 | 7.184 |
| NarL | 164-170 | 7.041 |
| UlaR | 217-236 | 6.740 |
| ArgR | 233-248 | 6.612 |
| TorR | 202-211 | 6.460 |
| TyrR | 235-256 | 6.364 |
| MetJ | 155-162 | 6.337 |
| H-NS | 48-62 | 6.318 |
| OmpR | 62-81 | 6.313 |
| Rob | 261-281 | 6.227 |
| DnaA | 41-49 | 6.219 |
| DeoR | 331-346 | 6.011 |
| Fis | 200-220 | 5.929 |
| RcsB | 78-91 | 5.559 |
| NarP | 195-201 | 5.498 |
| AgaR | 73-96 | 5.362 |
| NagC | 49-71 | 5.265 |
| MalT | 102-111 | 5.185 |