| TF name | Position | PWM scan score |
| FhlA | 92-131 | 14.368 |
| Rob | 275-295 | 9.901 |
| MarA | 365-385 | 9.895 |
| NarP | 72-78 | 8.982 |
| MalT | 220-229 | 8.532 |
| CueR | 192-210 | 8.240 |
| AraC | 54-71 | 7.701 |
| UxuR | 343-360 | 7.357 |
| GlpR | 273-292 | 7.206 |
| H-NS | 354-368 | 7.160 |
| LacI | 36-56 | 6.786 |
| NorR | 277-293 | 6.731 |
| TorR | 184-193 | 6.665 |
| MetJ | 165-172 | 6.337 |
| FadR | 81-97 | 5.913 |
| SoxS | 253-270 | 5.898 |
| IdnR | 174-189 | 5.790 |
| Fis | 42-62 | 5.633 |
| IHF | 53-65 | 5.237 |
| ArgP | 119-131 | 5.211 |
| PhoP | 205-221 | 5.156 |