| TF name | Position | PWM scan score |
| MarA | 62-82 | 8.265 |
| IHF | 374-386 | 8.201 |
| H-NS | 157-171 | 7.903 |
| DeoR | 367-382 | 7.809 |
| ArgP | 117-129 | 7.796 |
| ArgR | 370-385 | 7.356 |
| Fis | 104-124 | 7.321 |
| LacI | 219-239 | 7.109 |
| DnaA | 168-176 | 7.095 |
| Lrp | 140-151 | 7.061 |
| MetJ | 151-158 | 6.954 |
| FruR | 350-367 | 6.647 |
| MalT | 193-202 | 6.602 |
| ModE | 126-152 | 6.593 |
| FNR | 298-319 | 6.536 |
| AraC | 138-155 | 6.411 |
| AgaR | 331-354 | 6.066 |
| CpxR | 350-364 | 5.866 |
| TorR | 249-258 | 5.838 |
| MelR | 148-165 | 5.816 |
| TyrR | 133-154 | 5.748 |
| Ada | 361-388 | 5.601 |
| GadE | 138-157 | 5.304 |
| NarP | 362-368 | 5.154 |
| SoxS | 64-81 | 5.142 |
| Rob | 161-181 | 5.085 |