| TF name | Position | PWM scan score |
| FruR | 336-353 | 12.605 |
| TorR | 7-16 | 11.151 |
| GcvA | 127-155 | 10.922 |
| DnaA | 79-87 | 9.952 |
| MelR | 333-350 | 9.355 |
| FNR | 71-92 | 8.903 |
| CytR | 302-341 | 8.332 |
| NarL | 330-336 | 8.006 |
| SoxS | 124-141 | 7.972 |
| IHF | 80-92 | 7.843 |
| DeoR | 170-185 | 7.803 |
| NarP | 91-97 | 7.127 |
| RhaS | 159-175 | 7.092 |
| Rob | 11-31 | 6.839 |
| Fis | 108-128 | 6.540 |
| TyrR | 135-156 | 6.523 |
| H-NS | 360-374 | 6.494 |
| CpxR | 19-33 | 6.449 |
| OmpR | 327-346 | 6.362 |
| AraC | 333-350 | 5.999 |
| Lrp | 384-395 | 5.873 |
| MalT | 176-185 | 5.872 |
| PspF | 163-179 | 5.849 |
| PurR | 196-211 | 5.801 |
| NorR | 12-28 | 5.722 |
| IdnR | 130-145 | 5.667 |
| PhoP | 124-140 | 5.543 |
| UlaR | 137-156 | 5.419 |
| Fur | 276-290 | 5.285 |
| RcsB | 211-224 | 5.284 |
| UxuR | 332-349 | 5.232 |
| GlpR | 335-354 | 5.184 |
| ArgP | 121-133 | 5.148 |