| TF name | Position | PWM scan score |
| ArcA | 1-61 | 15.423 |
| H-NS | 278-292 | 13.764 |
| Fur | 374-388 | 13.392 |
| Nac | 199-213 | 11.761 |
| FNR | 315-336 | 11.635 |
| UlaR | 204-223 | 11.631 |
| CRP | 37-58 | 10.715 |
| AraC | 207-224 | 10.335 |
| IdnR | 339-354 | 9.927 |
| MarA | 80-100 | 9.775 |
| OmpR | 292-311 | 9.692 |
| SoxS | 40-57 | 9.535 |
| RhaS | 166-182 | 9.263 |
| FadR | 258-274 | 9.046 |
| Mlc | 341-363 | 9.024 |
| NagC | 321-343 | 8.962 |
| IHF | 222-234 | 8.867 |
| CysB | 10-51 | 8.748 |
| ArgR | 49-64 | 8.746 |
| GlpR | 357-376 | 8.612 |
| PhoB | 292-311 | 8.374 |
| AgaR | 35-58 | 8.200 |
| Fis | 118-138 | 7.929 |
| NtrC | 122-138 | 7.721 |
| Lrp | 382-393 | 7.688 |
| GadE | 172-191 | 7.684 |
| TyrR | 355-376 | 7.627 |
| NarP | 222-228 | 7.585 |
| XylR | 348-365 | 7.574 |
| PhoP | 276-292 | 7.263 |
| ModE | 97-123 | 6.872 |
| Ada | 302-329 | 6.718 |
| NarL | 151-157 | 6.268 |
| MelR | 374-391 | 6.100 |
| RcsB | 104-117 | 6.087 |
| DcuR | 327-381 | 5.998 |
| CpxR | 351-365 | 5.642 |
| MetJ | 182-189 | 5.567 |
| UxuR | 29-46 | 5.555 |
| Rob | 172-192 | 5.468 |
| ArgP | 102-114 | 5.148 |
| GntR | 198-217 | 5.144 |