| TF name | Position | PWM scan score |
| AraC | 328-345 | 10.377 |
| Rob | 370-390 | 10.205 |
| IHF | 383-395 | 10.106 |
| UxuR | 115-132 | 9.831 |
| Nac | 164-178 | 9.580 |
| GadE | 376-395 | 9.496 |
| FhlA | 271-310 | 9.086 |
| RcsB | 40-53 | 8.890 |
| OmpR | 370-389 | 8.710 |
| TorR | 369-378 | 8.649 |
| NagC | 158-180 | 8.432 |
| NtrC | 331-347 | 8.344 |
| FNR | 159-180 | 8.079 |
| MetJ | 16-23 | 7.936 |
| CueR | 31-49 | 7.877 |
| MelR | 212-229 | 7.724 |
| GalS | 284-299 | 7.634 |
| GalR | 284-299 | 7.634 |
| AgaR | 264-287 | 7.262 |
| H-NS | 374-388 | 7.218 |
| ArgP | 382-394 | 7.055 |
| CRP | 358-379 | 6.891 |
| TrpR | 228-245 | 6.795 |
| Lrp | 352-363 | 6.762 |
| PurR | 296-311 | 6.679 |
| PhoP | 377-393 | 6.566 |
| Fur | 383-397 | 6.475 |
| UlaR | 212-231 | 6.445 |
| XylR | 36-53 | 6.267 |
| NarP | 347-353 | 6.110 |
| Fis | 364-384 | 5.908 |
| DcuR | 176-230 | 5.855 |
| MalT | 304-313 | 5.806 |
| NarL | 236-242 | 5.661 |
| PspF | 34-50 | 5.440 |
| Ada | 181-208 | 5.244 |
| MarA | 47-67 | 5.102 |