| TF name | Position | PWM scan score |
| DeoR | 321-336 | 14.495 |
| Mlc | 367-389 | 14.241 |
| Nac | 240-254 | 12.574 |
| PhoP | 242-258 | 11.156 |
| CysB | 350-391 | 11.126 |
| LexA | 319-338 | 10.595 |
| UlaR | 358-377 | 10.561 |
| Fis | 248-268 | 10.339 |
| MelR | 262-279 | 10.243 |
| Ada | 349-376 | 9.534 |
| PspF | 348-364 | 9.233 |
| ArgR | 321-336 | 9.161 |
| NorR | 280-296 | 9.047 |
| H-NS | 382-396 | 8.752 |
| Lrp | 364-375 | 8.601 |
| AgaR | 353-376 | 8.465 |
| RhaS | 327-343 | 8.218 |
| ArgP | 381-393 | 8.067 |
| GlpR | 368-387 | 7.970 |
| NagC | 369-391 | 7.953 |
| FNR | 369-390 | 7.474 |
| TyrR | 360-381 | 7.332 |
| FadR | 82-98 | 7.179 |
| IdnR | 359-374 | 7.032 |
| ArcA | 232-292 | 6.912 |
| NarL | 243-249 | 6.854 |
| CpxR | 93-107 | 6.790 |
| MetR | 42-65 | 6.736 |
| NarP | 275-281 | 6.629 |
| IHF | 236-248 | 6.540 |
| PhoB | 160-179 | 6.445 |
| CRP | 196-217 | 6.444 |
| OmpR | 236-255 | 6.383 |
| RcsB | 365-378 | 6.353 |
| Rob | 347-367 | 6.201 |
| DnaA | 372-380 | 6.095 |
| MetJ | 116-123 | 6.013 |
| FhlA | 275-314 | 5.763 |
| GntR | 4-23 | 5.761 |
| TorR | 100-109 | 5.453 |
| MalT | 196-205 | 5.200 |
| PurR | 362-377 | 5.171 |