| TF name | Position | PWM scan score |
| RcsB | 223-236 | 12.748 |
| MarA | 379-399 | 12.078 |
| XylR | 284-301 | 12.033 |
| Nac | 259-273 | 11.108 |
| Rob | 294-314 | 10.723 |
| SoxS | 381-398 | 10.710 |
| CRP | 90-111 | 10.141 |
| GlpR | 376-395 | 10.064 |
| Ada | 238-265 | 9.758 |
| FNR | 361-382 | 9.739 |
| IHF | 370-382 | 9.464 |
| MalT | 41-50 | 9.319 |
| CpxR | 237-251 | 8.582 |
| Lrp | 225-236 | 8.496 |
| H-NS | 290-304 | 8.395 |
| TorR | 15-24 | 8.141 |
| DeoR | 261-276 | 8.089 |
| PurR | 101-116 | 7.831 |
| Fis | 147-167 | 7.594 |
| PspF | 24-40 | 7.414 |
| NarP | 232-238 | 7.352 |
| DnaA | 293-301 | 7.330 |
| AraC | 249-266 | 7.191 |
| NarL | 117-123 | 7.107 |
| UlaR | 28-47 | 7.061 |
| IdnR | 248-263 | 6.945 |
| FruR | 137-154 | 6.861 |
| GadE | 290-309 | 6.726 |
| NtrC | 223-239 | 6.658 |
| ArcA | 67-127 | 6.600 |
| MelR | 206-223 | 6.164 |
| GalR | 227-242 | 6.161 |
| GalS | 227-242 | 6.161 |
| DcuR | 89-143 | 6.138 |
| CueR | 346-364 | 6.044 |
| Fur | 304-318 | 5.965 |
| OxyR | 89-133 | 5.911 |
| GcvA | 220-248 | 5.574 |
| PhoB | 182-201 | 5.486 |
| NorR | 87-103 | 5.403 |
| AgaR | 159-182 | 5.179 |
| ArgP | 378-390 | 5.157 |
| ModE | 218-244 | 5.140 |