| TF name | Position | PWM scan score |
| MelR | 21-38 | 14.169 |
| PhoB | 20-39 | 12.912 |
| GlpR | 23-42 | 11.652 |
| H-NS | 292-306 | 9.987 |
| SoxS | 92-109 | 9.957 |
| OxyR | 196-240 | 9.795 |
| MetJ | 8-15 | 9.381 |
| NarP | 375-381 | 8.841 |
| AraC | 358-375 | 8.755 |
| TorR | 126-135 | 8.515 |
| ArcA | 18-78 | 8.489 |
| ArgP | 384-396 | 8.362 |
| IdnR | 228-243 | 7.942 |
| Mlc | 367-389 | 7.890 |
| RcsB | 164-177 | 7.809 |
| GcvA | 360-388 | 7.463 |
| OmpR | 8-27 | 7.276 |
| ArgR | 101-116 | 6.998 |
| Fur | 38-52 | 6.929 |
| DnaA | 336-344 | 6.896 |
| Lrp | 47-58 | 6.877 |
| NtrC | 27-43 | 6.815 |
| IHF | 104-116 | 6.673 |
| FNR | 213-234 | 6.571 |
| Fis | 295-315 | 6.564 |
| MalT | 207-216 | 6.549 |
| GadE | 265-284 | 6.535 |
| MarA | 293-313 | 6.353 |
| NagC | 31-53 | 6.282 |
| PurR | 137-152 | 6.119 |
| CpxR | 364-378 | 6.042 |
| Rob | 233-253 | 6.029 |
| PhoP | 38-54 | 5.859 |
| MetR | 115-138 | 5.733 |
| GalR | 230-245 | 5.136 |
| GalS | 230-245 | 5.136 |
| NarL | 241-247 | 5.119 |
| LexA | 242-261 | 5.101 |