| TF name | Position | PWM scan score |
| FNR | 369-390 | 10.889 |
| MarA | 311-331 | 8.913 |
| MalT | 86-95 | 8.579 |
| IHF | 268-280 | 8.178 |
| GntR | 8-27 | 8.048 |
| CueR | 244-262 | 8.043 |
| PhoP | 214-230 | 7.668 |
| ArgP | 310-322 | 7.441 |
| OmpR | 298-317 | 7.356 |
| NarP | 104-110 | 7.232 |
| H-NS | 314-328 | 7.222 |
| GalR | 32-47 | 7.217 |
| GalS | 32-47 | 7.217 |
| LexA | 137-156 | 7.016 |
| CpxR | 49-63 | 6.993 |
| IdnR | 247-262 | 6.945 |
| TorR | 39-48 | 6.877 |
| DnaA | 278-286 | 6.818 |
| PurR | 18-33 | 6.806 |
| NarL | 381-387 | 6.718 |
| CysB | 203-244 | 6.638 |
| CRP | 28-49 | 6.590 |
| Fis | 209-229 | 6.564 |
| SoxS | 61-78 | 6.484 |
| RhaS | 101-117 | 6.248 |
| Lrp | 163-174 | 6.222 |
| FadR | 25-41 | 6.054 |
| AgaR | 182-205 | 6.046 |
| XylR | 378-395 | 6.024 |
| DeoR | 116-131 | 5.607 |
| MetJ | 28-35 | 5.572 |
| AraC | 28-45 | 5.569 |
| GlpR | 12-31 | 5.247 |
| ModE | 337-363 | 5.175 |
| Fur | 369-383 | 5.096 |