| TF name | Position | PWM scan score |
| ArcA | 290-350 | 15.550 |
| ArgR | 308-323 | 13.951 |
| XylR | 40-57 | 12.129 |
| GadE | 315-334 | 11.618 |
| IHF | 290-302 | 11.408 |
| FhlA | 265-304 | 11.161 |
| Fis | 305-325 | 11.006 |
| FNR | 315-336 | 10.937 |
| H-NS | 294-308 | 10.518 |
| PurR | 104-119 | 10.396 |
| RcsB | 370-383 | 10.324 |
| GalR | 300-315 | 9.694 |
| GalS | 300-315 | 9.694 |
| GntR | 355-374 | 9.261 |
| RhaS | 112-128 | 8.778 |
| CRP | 330-351 | 8.666 |
| AgaR | 303-326 | 8.513 |
| CysB | 316-357 | 8.421 |
| PhoB | 10-29 | 8.364 |
| MelR | 188-205 | 8.198 |
| ArgP | 337-349 | 7.976 |
| SoxS | 358-375 | 7.884 |
| Lrp | 369-380 | 7.489 |
| TorR | 30-39 | 7.372 |
| LexA | 334-353 | 7.244 |
| Rob | 302-322 | 7.143 |
| DeoR | 334-349 | 7.119 |
| Fur | 333-347 | 7.049 |
| OmpR | 302-321 | 7.037 |
| MetR | 125-148 | 6.984 |
| Nac | 362-376 | 6.962 |
| GlpR | 219-238 | 6.698 |
| NarL | 335-341 | 6.678 |
| PspF | 351-367 | 6.558 |
| UxuR | 38-55 | 6.482 |
| OxyR | 298-342 | 6.430 |
| AraC | 104-121 | 6.229 |
| FadR | 260-276 | 6.156 |
| MarA | 220-240 | 6.004 |
| DnaA | 199-207 | 5.860 |
| NagC | 315-337 | 5.471 |
| Ada | 67-94 | 5.356 |
| CpxR | 69-83 | 5.261 |
| NarP | 201-207 | 5.098 |
| LacI | 135-155 | 5.094 |
| UlaR | 366-385 | 5.045 |
| MetJ | 267-274 | 5.040 |