| TF name | Position | PWM scan score |
| ArcA | 255-315 | 15.126 |
| ArgR | 297-312 | 11.805 |
| FNR | 368-389 | 11.525 |
| CytR | 30-69 | 11.364 |
| NagC | 256-278 | 11.337 |
| TyrR | 273-294 | 11.299 |
| OmpR | 268-287 | 11.237 |
| Mlc | 274-296 | 10.967 |
| CRP | 341-362 | 10.498 |
| AgaR | 117-140 | 10.356 |
| UxuR | 83-100 | 10.229 |
| GcvA | 264-292 | 10.177 |
| AraC | 350-367 | 9.802 |
| CysB | 351-392 | 9.674 |
| DnaA | 50-58 | 9.644 |
| XylR | 265-282 | 9.472 |
| H-NS | 280-294 | 9.167 |
| GntR | 253-272 | 9.142 |
| Nac | 354-368 | 9.125 |
| MetJ | 102-109 | 8.612 |
| Fis | 226-246 | 8.479 |
| MarA | 176-196 | 8.185 |
| NorR | 360-376 | 8.117 |
| SoxS | 34-51 | 7.992 |
| Lrp | 343-354 | 7.989 |
| DeoR | 165-180 | 7.751 |
| Ada | 288-315 | 7.739 |
| IHF | 51-63 | 7.559 |
| RcsB | 359-372 | 7.524 |
| ModE | 261-287 | 7.392 |
| NarL | 360-366 | 7.283 |
| MalT | 14-23 | 7.098 |
| PhoB | 272-291 | 7.079 |
| LacI | 340-360 | 7.075 |
| MetR | 37-60 | 6.848 |
| PspF | 358-374 | 6.736 |
| GlpR | 56-75 | 6.735 |
| UlaR | 246-265 | 6.086 |
| NarP | 307-313 | 6.076 |
| Rob | 374-394 | 6.069 |
| ArgP | 59-71 | 6.038 |
| CpxR | 278-292 | 5.996 |
| GalS | 286-301 | 5.965 |
| GalR | 286-301 | 5.965 |
| PhoP | 133-149 | 5.549 |
| DcuR | 73-127 | 5.335 |
| CueR | 97-115 | 5.275 |
| IdnR | 33-48 | 5.112 |