| TF name | Position | PWM scan score |
| PhoP | 376-392 | 15.861 |
| ArcA | 200-260 | 15.021 |
| OmpR | 353-372 | 14.435 |
| AraC | 93-110 | 13.849 |
| ArgR | 213-228 | 13.582 |
| Rob | 377-397 | 13.444 |
| H-NS | 380-394 | 12.505 |
| FNR | 16-37 | 11.525 |
| CysB | 354-395 | 11.001 |
| GntR | 96-115 | 10.031 |
| DnaA | 322-330 | 9.874 |
| Ada | 293-320 | 9.785 |
| Lrp | 122-133 | 9.474 |
| XylR | 91-108 | 9.303 |
| Nac | 2-16 | 9.125 |
| MetJ | 63-70 | 9.118 |
| Fis | 347-367 | 8.837 |
| GlpR | 37-56 | 8.566 |
| PurR | 93-108 | 8.408 |
| NagC | 354-376 | 8.331 |
| NorR | 8-24 | 8.117 |
| GcvA | 362-390 | 8.062 |
| IHF | 206-218 | 8.033 |
| MarA | 184-204 | 8.012 |
| ArgP | 251-263 | 7.883 |
| TyrR | 5-26 | 7.549 |
| GalR | 148-163 | 7.531 |
| GalS | 148-163 | 7.531 |
| RcsB | 7-20 | 7.524 |
| Fur | 200-214 | 7.438 |
| GadE | 380-399 | 7.346 |
| RhaS | 314-330 | 7.325 |
| NarL | 8-14 | 7.283 |
| OxyR | 354-398 | 6.914 |
| SoxS | 186-203 | 6.903 |
| PspF | 6-22 | 6.736 |
| TorR | 374-383 | 6.711 |
| LacI | 221-241 | 6.400 |
| PhoB | 370-389 | 6.384 |
| IdnR | 383-398 | 6.358 |
| CytR | 356-395 | 6.200 |
| CRP | 368-389 | 6.162 |
| NarP | 286-292 | 6.029 |
| UxuR | 328-345 | 5.460 |
| DeoR | 18-33 | 5.451 |
| ModE | 200-226 | 5.417 |
| MalT | 271-280 | 5.241 |
| MetR | 343-366 | 5.231 |