| TF name | Position | PWM scan score |
| MalT | 233-242 | 12.079 |
| Fur | 374-388 | 11.788 |
| IHF | 119-131 | 11.065 |
| H-NS | 338-352 | 10.828 |
| UlaR | 154-173 | 10.483 |
| CysB | 334-375 | 10.475 |
| Ada | 145-172 | 10.034 |
| Fis | 300-320 | 9.492 |
| ArgR | 331-346 | 9.237 |
| FNR | 329-350 | 9.192 |
| CRP | 164-185 | 8.967 |
| PhoB | 330-349 | 8.901 |
| DnaA | 60-68 | 8.669 |
| AraC | 300-317 | 8.414 |
| SoxS | 83-100 | 8.259 |
| CueR | 80-98 | 8.043 |
| RcsB | 145-158 | 7.870 |
| ModE | 97-123 | 7.623 |
| XylR | 337-354 | 7.487 |
| ArcA | 294-354 | 7.439 |
| MetR | 309-332 | 7.140 |
| OmpR | 271-290 | 7.033 |
| CpxR | 336-350 | 6.791 |
| Mlc | 194-216 | 6.641 |
| NarL | 48-54 | 6.560 |
| PurR | 158-173 | 6.288 |
| GcvA | 27-55 | 6.139 |
| FadR | 242-258 | 6.112 |
| IdnR | 203-218 | 6.055 |
| RhaS | 300-316 | 6.043 |
| DeoR | 176-191 | 6.018 |
| Lrp | 370-381 | 6.003 |
| LacI | 374-394 | 5.892 |
| MetJ | 362-369 | 5.808 |
| ArgP | 339-351 | 5.737 |
| LexA | 72-91 | 5.674 |
| GntR | 303-322 | 5.452 |
| PspF | 210-226 | 5.442 |
| NorR | 301-317 | 5.268 |
| PhoP | 374-390 | 5.172 |
| NagC | 196-218 | 5.146 |