| TF name | Position | PWM scan score |
| FNR | 225-246 | 16.395 |
| NtrC | 294-310 | 13.644 |
| CRP | 365-386 | 12.504 |
| ArgR | 376-391 | 11.696 |
| Rob | 241-261 | 11.323 |
| H-NS | 383-397 | 10.639 |
| OmpR | 369-388 | 9.875 |
| IHF | 379-391 | 9.489 |
| Fis | 301-321 | 9.023 |
| SoxS | 295-312 | 8.856 |
| LexA | 221-240 | 8.854 |
| MalT | 167-176 | 8.662 |
| MarA | 373-393 | 8.658 |
| NagC | 69-91 | 8.328 |
| TorR | 327-336 | 8.166 |
| MetJ | 225-232 | 8.082 |
| ArcA | 331-391 | 7.907 |
| PspF | 179-195 | 7.856 |
| IdnR | 301-316 | 7.710 |
| Lrp | 341-352 | 7.384 |
| AraC | 247-264 | 7.292 |
| GalS | 197-212 | 7.194 |
| GalR | 197-212 | 7.194 |
| CysB | 328-369 | 7.135 |
| NarL | 391-397 | 6.744 |
| ArgP | 378-390 | 6.682 |
| AgaR | 360-383 | 6.518 |
| DnaA | 227-235 | 6.355 |
| GcvA | 315-343 | 6.290 |
| PhoB | 375-394 | 6.263 |
| Mlc | 67-89 | 6.084 |
| RhaS | 70-86 | 6.021 |
| GntR | 371-390 | 5.826 |
| RcsB | 216-229 | 5.670 |
| TyrR | 364-385 | 5.545 |
| NarP | 380-386 | 5.482 |
| MetR | 314-337 | 5.253 |
| CytR | 240-279 | 5.111 |