| TF name | Position | PWM scan score |
| NagC | 369-391 | 11.886 |
| MetR | 209-232 | 11.657 |
| IdnR | 86-101 | 11.544 |
| IHF | 23-35 | 11.410 |
| ArcA | 31-91 | 10.814 |
| NorR | 213-229 | 10.388 |
| RcsB | 42-55 | 9.574 |
| MetJ | 76-83 | 9.118 |
| DnaA | 297-305 | 8.977 |
| H-NS | 78-92 | 8.889 |
| TorR | 96-105 | 8.649 |
| NarL | 391-397 | 8.353 |
| FNR | 79-100 | 8.152 |
| DeoR | 82-97 | 7.884 |
| Mlc | 367-389 | 7.758 |
| Lrp | 294-305 | 7.717 |
| Nac | 375-389 | 7.599 |
| AgaR | 46-69 | 7.563 |
| FhlA | 223-262 | 7.512 |
| TyrR | 289-310 | 7.504 |
| ArgP | 46-58 | 7.441 |
| Fis | 177-197 | 7.102 |
| GlpR | 78-97 | 7.014 |
| CysB | 356-397 | 6.900 |
| AraC | 350-367 | 6.630 |
| PhoB | 5-24 | 6.544 |
| XylR | 77-94 | 6.245 |
| Ada | 208-235 | 6.237 |
| NarP | 303-309 | 6.110 |
| NtrC | 329-345 | 5.944 |
| MalT | 376-385 | 5.445 |
| OmpR | 4-23 | 5.351 |
| UxuR | 48-65 | 5.311 |
| PurR | 168-183 | 5.115 |
| GcvA | 251-279 | 5.083 |
| RhaS | 241-257 | 5.022 |