| TF name | Position | PWM scan score |
| OmpR | 239-258 | 14.374 |
| Rob | 54-74 | 12.499 |
| GcvA | 270-298 | 11.234 |
| ArcA | 326-386 | 10.846 |
| AraC | 327-344 | 10.774 |
| Fur | 380-394 | 10.677 |
| IHF | 288-300 | 10.291 |
| FNR | 145-166 | 10.217 |
| XylR | 237-254 | 10.048 |
| DeoR | 103-118 | 9.766 |
| OxyR | 141-185 | 9.568 |
| CRP | 3-24 | 9.499 |
| GadE | 218-237 | 9.378 |
| ArgP | 351-363 | 9.292 |
| UlaR | 207-226 | 8.890 |
| NagC | 21-43 | 8.603 |
| Nac | 220-234 | 8.588 |
| H-NS | 379-393 | 8.536 |
| ArgR | 378-393 | 8.499 |
| TorR | 221-230 | 8.457 |
| Fis | 11-31 | 8.413 |
| FruR | 52-69 | 8.142 |
| AgaR | 156-179 | 7.822 |
| MelR | 1-18 | 7.667 |
| MetR | 283-306 | 7.646 |
| PspF | 96-112 | 7.624 |
| NarL | 33-39 | 7.577 |
| SoxS | 361-378 | 7.444 |
| MarA | 369-389 | 7.405 |
| FadR | 354-370 | 7.208 |
| PhoB | 229-248 | 7.089 |
| GlpR | 277-296 | 7.049 |
| MetJ | 3-10 | 7.046 |
| Lrp | 263-274 | 6.871 |
| TyrR | 300-321 | 6.737 |
| PhoP | 370-386 | 6.681 |
| DnaA | 184-192 | 6.558 |
| GntR | 324-343 | 6.179 |
| NarP | 164-170 | 5.532 |
| RcsB | 327-340 | 5.450 |
| NtrC | 155-171 | 5.349 |
| CysB | 249-290 | 5.206 |