| TF name | Position | PWM scan score |
| LexA | 23-42 | 14.686 |
| AgaR | 14-37 | 14.108 |
| CpxR | 163-177 | 13.451 |
| CysB | 349-390 | 12.459 |
| RhaS | 63-79 | 11.920 |
| RcsB | 13-26 | 11.457 |
| GadE | 3-22 | 10.892 |
| NtrC | 77-93 | 10.590 |
| ArgR | 12-27 | 10.030 |
| NagC | 3-25 | 9.977 |
| ArgP | 75-87 | 9.716 |
| IHF | 97-109 | 9.618 |
| Fis | 73-93 | 8.656 |
| DnaA | 145-153 | 8.576 |
| UxuR | 292-309 | 8.309 |
| PspF | 376-392 | 7.943 |
| UlaR | 100-119 | 7.826 |
| NarP | 208-214 | 7.426 |
| NarL | 131-137 | 7.309 |
| MetJ | 386-393 | 7.240 |
| TorR | 96-105 | 7.222 |
| ArcA | 101-161 | 7.194 |
| IdnR | 235-250 | 6.957 |
| Lrp | 158-169 | 6.823 |
| Nac | 99-113 | 6.599 |
| AraC | 101-118 | 6.496 |
| FNR | 341-362 | 6.204 |
| H-NS | 2-16 | 6.204 |
| Mlc | 144-166 | 6.177 |
| OmpR | 2-21 | 6.116 |
| GcvA | 337-365 | 6.073 |
| DeoR | 188-203 | 5.841 |
| GlpR | 6-25 | 5.452 |
| TyrR | 6-27 | 5.303 |
| MalT | 258-267 | 5.156 |