| TF name | Position | PWM scan score |
| UlaR | 355-374 | 12.496 |
| ArgR | 68-83 | 9.966 |
| H-NS | 70-84 | 9.829 |
| Lrp | 340-351 | 9.339 |
| CysB | 344-385 | 9.287 |
| PhoB | 257-276 | 9.270 |
| NagC | 343-365 | 8.539 |
| ArgP | 355-367 | 8.518 |
| Fis | 71-91 | 8.504 |
| GlpR | 367-386 | 8.159 |
| DeoR | 331-346 | 7.910 |
| FadR | 29-45 | 7.718 |
| ArcA | 322-382 | 7.594 |
| OmpR | 74-93 | 7.510 |
| FhlA | 318-357 | 7.445 |
| SoxS | 86-103 | 7.338 |
| IHF | 82-94 | 6.982 |
| LexA | 66-85 | 6.930 |
| FNR | 8-29 | 6.527 |
| AraC | 74-91 | 6.480 |
| AgaR | 341-364 | 6.174 |
| DnaA | 81-89 | 5.910 |
| NorR | 75-91 | 5.801 |
| MalT | 276-285 | 5.784 |
| GntR | 341-360 | 5.559 |
| TorR | 55-64 | 5.414 |
| Fur | 343-357 | 5.409 |
| CpxR | 9-23 | 5.244 |
| Nac | 367-381 | 5.221 |
| NarL | 351-357 | 5.140 |
| Rob | 73-93 | 5.133 |
| Mlc | 359-381 | 5.115 |