| TF name | Position | PWM scan score |
| LacI | 242-262 | 11.033 |
| H-NS | 323-337 | 10.332 |
| ArcA | 324-384 | 9.738 |
| GadE | 324-343 | 9.420 |
| MelR | 293-310 | 9.387 |
| Rob | 323-343 | 9.209 |
| ModE | 314-340 | 9.164 |
| CpxR | 332-346 | 8.284 |
| MalT | 109-118 | 8.190 |
| XylR | 138-155 | 8.078 |
| IHF | 317-329 | 8.056 |
| Lrp | 320-331 | 7.933 |
| GlpR | 295-314 | 7.603 |
| AgaR | 315-338 | 7.398 |
| FadR | 382-398 | 7.237 |
| NarL | 141-147 | 7.147 |
| MarA | 290-310 | 6.917 |
| SoxS | 349-366 | 6.887 |
| Mlc | 319-341 | 6.840 |
| OmpR | 279-298 | 6.680 |
| RhaS | 35-51 | 6.485 |
| LexA | 160-179 | 6.473 |
| DnaA | 168-176 | 6.433 |
| Nac | 92-106 | 6.343 |
| Fis | 5-25 | 6.310 |
| NorR | 201-217 | 6.040 |
| UxuR | 167-184 | 5.997 |
| NarP | 266-272 | 5.875 |
| ArgP | 328-340 | 5.690 |
| UlaR | 326-345 | 5.622 |
| ArgR | 11-26 | 5.342 |
| RcsB | 140-153 | 5.194 |
| DeoR | 357-372 | 5.075 |
| CRP | 139-160 | 5.049 |