| TF name | Position | PWM scan score |
| OmpR | 151-170 | 15.229 |
| Nac | 133-147 | 13.734 |
| TorR | 134-143 | 10.913 |
| Fur | 122-136 | 9.600 |
| DnaA | 133-141 | 9.352 |
| NtrC | 159-175 | 9.049 |
| CysB | 135-176 | 8.930 |
| OxyR | 303-347 | 8.824 |
| TyrR | 206-227 | 8.739 |
| H-NS | 345-359 | 8.504 |
| PhoB | 5-24 | 8.464 |
| DeoR | 109-124 | 8.372 |
| ArgR | 147-162 | 7.865 |
| AgaR | 293-316 | 7.707 |
| CRP | 314-335 | 7.538 |
| SoxS | 85-102 | 7.286 |
| Rob | 187-207 | 7.156 |
| Lrp | 128-139 | 6.969 |
| RcsB | 346-359 | 6.922 |
| NarL | 150-156 | 6.881 |
| IdnR | 154-169 | 6.866 |
| CytR | 104-143 | 6.835 |
| Fis | 7-27 | 6.798 |
| NarP | 43-49 | 6.598 |
| GntR | 126-145 | 6.570 |
| ArgP | 150-162 | 6.502 |
| MetR | 133-156 | 6.484 |
| GadE | 262-281 | 6.392 |
| MelR | 183-200 | 6.354 |
| CpxR | 279-293 | 5.887 |
| IHF | 244-256 | 5.537 |
| NorR | 116-132 | 5.482 |
| MetJ | 354-361 | 5.321 |
| ArcA | 125-185 | 5.281 |
| UxuR | 339-356 | 5.113 |