| TF name | Position | PWM scan score |
| ArcA | 161-221 | 15.180 |
| CRP | 28-49 | 13.359 |
| TyrR | 21-42 | 12.704 |
| OmpR | 26-45 | 12.682 |
| GntR | 26-45 | 12.141 |
| UxuR | 4-21 | 10.766 |
| GlpR | 64-83 | 10.419 |
| NagC | 340-362 | 10.411 |
| Fis | 54-74 | 10.157 |
| CpxR | 193-207 | 9.947 |
| FNR | 31-52 | 9.846 |
| ArgR | 108-123 | 9.697 |
| PspF | 354-370 | 9.631 |
| IHF | 216-228 | 9.561 |
| GadE | 322-341 | 9.347 |
| RcsB | 11-24 | 9.221 |
| CytR | 38-77 | 9.216 |
| H-NS | 220-234 | 9.155 |
| MetR | 2-25 | 9.063 |
| PhoB | 212-231 | 8.396 |
| NarL | 245-251 | 8.353 |
| LexA | 106-125 | 8.325 |
| Lrp | 299-310 | 8.309 |
| XylR | 214-231 | 7.714 |
| ModE | 124-150 | 7.601 |
| Nac | 38-52 | 7.551 |
| MarA | 189-209 | 7.508 |
| CysB | 324-365 | 7.453 |
| UlaR | 308-327 | 6.896 |
| TorR | 67-76 | 6.665 |
| SoxS | 107-124 | 6.591 |
| FruR | 264-281 | 6.456 |
| DnaA | 6-14 | 6.433 |
| IdnR | 276-291 | 6.246 |
| Rob | 249-269 | 6.246 |
| DeoR | 161-176 | 6.240 |
| MalT | 65-74 | 6.147 |
| ArgP | 227-239 | 6.036 |
| NorR | 170-186 | 6.015 |
| PhoP | 55-71 | 5.831 |
| MetJ | 371-378 | 5.700 |
| AraC | 346-363 | 5.681 |
| Mlc | 338-360 | 5.598 |
| FhlA | 11-50 | 5.481 |
| NtrC | 11-27 | 5.341 |
| FadR | 307-323 | 5.220 |