| TF name | Position | PWM scan score |
| ModE | 252-278 | 18.540 |
| NagC | 57-79 | 15.162 |
| Fur | 15-29 | 14.250 |
| GadE | 31-50 | 11.658 |
| OmpR | 7-26 | 11.383 |
| TorR | 156-165 | 10.740 |
| ArgP | 271-283 | 10.724 |
| UlaR | 333-352 | 10.188 |
| ArcA | 246-306 | 9.982 |
| GntR | 18-37 | 9.260 |
| AraC | 269-286 | 8.893 |
| PurR | 16-31 | 8.374 |
| NarL | 131-137 | 8.353 |
| TyrR | 5-26 | 8.216 |
| CytR | 305-344 | 8.014 |
| MetR | 306-329 | 7.958 |
| GlpR | 202-221 | 7.957 |
| Fis | 345-365 | 7.856 |
| ArgR | 351-366 | 7.823 |
| MetJ | 11-18 | 7.792 |
| XylR | 338-355 | 7.552 |
| Nac | 3-17 | 7.323 |
| PhoP | 158-174 | 7.217 |
| IHF | 276-288 | 7.185 |
| CpxR | 278-292 | 7.095 |
| UxuR | 273-290 | 7.094 |
| GalR | 16-31 | 7.079 |
| GalS | 16-31 | 7.079 |
| FadR | 48-64 | 6.862 |
| RcsB | 297-310 | 6.706 |
| CysB | 300-341 | 6.670 |
| DeoR | 348-363 | 6.615 |
| GcvA | 337-365 | 6.609 |
| MelR | 229-246 | 6.522 |
| DnaA | 387-395 | 6.433 |
| MarA | 21-41 | 6.418 |
| MalT | 364-373 | 6.251 |
| Mlc | 274-296 | 6.238 |
| H-NS | 353-367 | 6.198 |
| Lrp | 18-29 | 6.160 |
| PhoB | 308-327 | 6.008 |
| FNR | 5-26 | 5.967 |
| CRP | 12-33 | 5.818 |
| SoxS | 266-283 | 5.275 |
| DcuR | 160-214 | 5.268 |