| TF name | Position | PWM scan score |
| ArcA | 293-353 | 13.181 |
| GadE | 326-345 | 11.334 |
| AgaR | 160-183 | 10.234 |
| CysB | 177-218 | 10.114 |
| H-NS | 209-223 | 10.004 |
| CRP | 304-325 | 9.529 |
| ArgP | 239-251 | 9.352 |
| UxuR | 312-329 | 9.290 |
| DnaA | 325-333 | 9.149 |
| GalS | 276-291 | 8.995 |
| GalR | 276-291 | 8.995 |
| TyrR | 185-206 | 8.986 |
| ModE | 339-365 | 8.844 |
| NarL | 140-146 | 8.782 |
| TorR | 322-331 | 8.677 |
| RcsB | 173-186 | 8.525 |
| AraC | 327-344 | 8.111 |
| Fis | 191-211 | 8.075 |
| IHF | 327-339 | 7.893 |
| Rob | 208-228 | 7.504 |
| MalT | 99-108 | 7.474 |
| NarP | 392-398 | 7.377 |
| Lrp | 194-205 | 7.263 |
| Fur | 189-203 | 7.208 |
| Nac | 187-201 | 7.186 |
| OmpR | 333-352 | 7.082 |
| MetJ | 360-367 | 7.013 |
| ArgR | 214-229 | 7.001 |
| Mlc | 240-262 | 6.951 |
| FNR | 191-212 | 6.867 |
| OxyR | 214-258 | 6.777 |
| MarA | 335-355 | 6.752 |
| Ada | 55-82 | 6.366 |
| UlaR | 164-183 | 6.068 |
| LacI | 306-326 | 6.013 |
| NagC | 175-197 | 5.976 |
| PurR | 217-232 | 5.849 |
| PhoB | 71-90 | 5.625 |
| PspF | 319-335 | 5.573 |
| CpxR | 333-347 | 5.489 |
| SoxS | 163-180 | 5.341 |
| GlpR | 348-367 | 5.027 |