| TF name | Position | PWM scan score |
| TyrR | 174-195 | 11.667 |
| AgaR | 344-367 | 11.457 |
| ArcA | 228-288 | 11.424 |
| Rob | 39-59 | 11.405 |
| Ada | 304-331 | 11.032 |
| CRP | 356-377 | 10.874 |
| H-NS | 345-359 | 10.771 |
| UlaR | 243-262 | 10.643 |
| GlpR | 271-290 | 10.371 |
| NagC | 328-350 | 10.130 |
| FNR | 325-346 | 9.974 |
| Nac | 254-268 | 9.704 |
| IHF | 216-228 | 9.654 |
| OxyR | 342-386 | 9.415 |
| SoxS | 371-388 | 9.247 |
| Mlc | 183-205 | 8.668 |
| PspF | 334-350 | 8.468 |
| RcsB | 67-80 | 8.450 |
| ArgR | 313-328 | 8.366 |
| OmpR | 41-60 | 8.316 |
| GadE | 256-275 | 8.189 |
| NarP | 289-295 | 8.025 |
| ArgP | 264-276 | 7.976 |
| Lrp | 313-324 | 7.831 |
| UxuR | 258-275 | 7.552 |
| MetR | 336-359 | 7.499 |
| ModE | 348-374 | 7.447 |
| Fis | 128-148 | 7.288 |
| PhoP | 342-358 | 7.123 |
| DeoR | 327-342 | 7.079 |
| NarL | 260-266 | 6.881 |
| MelR | 346-363 | 6.579 |
| MetJ | 129-136 | 6.471 |
| CysB | 329-370 | 6.295 |
| IdnR | 228-243 | 6.267 |
| NorR | 358-374 | 6.211 |
| TorR | 239-248 | 6.157 |
| PhoB | 218-237 | 6.037 |
| PurR | 104-119 | 5.912 |
| MalT | 389-398 | 5.825 |
| DnaA | 172-180 | 5.662 |
| XylR | 358-375 | 5.439 |
| CpxR | 375-389 | 5.341 |
| FruR | 232-249 | 5.100 |
| AraC | 311-328 | 5.077 |
| FhlA | 128-167 | 5.042 |