| TF name | Position | PWM scan score |
| XylR | 374-391 | 14.000 |
| RcsB | 138-151 | 8.621 |
| NarL | 84-90 | 8.353 |
| FNR | 140-161 | 8.330 |
| Fis | 337-357 | 8.304 |
| GntR | 74-93 | 8.228 |
| GlpR | 66-85 | 7.985 |
| GadE | 54-73 | 7.723 |
| PhoB | 243-262 | 7.519 |
| Nac | 50-64 | 7.456 |
| CysB | 167-208 | 7.380 |
| NarP | 275-281 | 7.127 |
| Lrp | 140-151 | 7.057 |
| CueR | 353-371 | 6.537 |
| Mlc | 331-353 | 6.264 |
| PhoP | 201-217 | 6.195 |
| GcvA | 362-390 | 6.019 |
| MelR | 320-337 | 6.017 |
| AgaR | 235-258 | 5.955 |
| MalT | 128-137 | 5.856 |
| OmpR | 376-395 | 5.856 |
| DeoR | 187-202 | 5.705 |
| H-NS | 50-64 | 5.600 |
| MarA | 188-208 | 5.480 |
| FadR | 103-119 | 5.414 |
| IHF | 61-73 | 5.290 |
| ModE | 146-172 | 5.090 |
| CytR | 295-334 | 5.007 |
| LacI | 179-199 | 5.003 |