| TF name | Position | PWM scan score |
| SoxS | 172-189 | 12.936 |
| MalT | 247-256 | 10.630 |
| FhlA | 356-395 | 10.558 |
| IdnR | 14-29 | 10.068 |
| GntR | 266-285 | 9.564 |
| GadE | 102-121 | 9.465 |
| DnaA | 105-113 | 8.639 |
| PhoB | 375-394 | 8.523 |
| MetR | 138-161 | 8.253 |
| RcsB | 41-54 | 8.119 |
| NorR | 355-371 | 8.084 |
| GalR | 270-285 | 8.011 |
| GalS | 270-285 | 8.011 |
| IHF | 16-28 | 7.756 |
| MetJ | 330-337 | 7.663 |
| TyrR | 302-323 | 7.353 |
| GlpR | 176-195 | 7.255 |
| DeoR | 380-395 | 7.121 |
| NarL | 231-237 | 7.041 |
| Lrp | 311-322 | 7.006 |
| RhaS | 311-327 | 6.623 |
| H-NS | 139-153 | 6.599 |
| AraC | 196-213 | 6.352 |
| PspF | 347-363 | 6.330 |
| CRP | 157-178 | 5.932 |
| UxuR | 377-394 | 5.690 |
| Fis | 95-115 | 5.366 |
| XylR | 194-211 | 5.168 |
| CueR | 45-63 | 5.101 |
| FNR | 361-382 | 5.080 |