| TF name | Position | PWM scan score |
| GlpR | 172-191 | 12.335 |
| FNR | 274-295 | 11.807 |
| Fis | 376-396 | 11.569 |
| PhoP | 352-368 | 11.235 |
| Fur | 289-303 | 11.048 |
| ArcA | 238-298 | 10.948 |
| Ada | 244-271 | 10.741 |
| IHF | 198-210 | 9.821 |
| PurR | 218-233 | 9.795 |
| CysB | 232-273 | 9.428 |
| OmpR | 299-318 | 8.902 |
| CRP | 271-292 | 8.732 |
| LacI | 300-320 | 8.573 |
| H-NS | 170-184 | 8.563 |
| TorR | 100-109 | 8.121 |
| CytR | 224-263 | 8.075 |
| DnaA | 208-216 | 7.375 |
| SoxS | 28-45 | 7.325 |
| RcsB | 242-255 | 7.303 |
| MetJ | 368-375 | 7.138 |
| Lrp | 176-187 | 7.136 |
| MarA | 173-193 | 7.133 |
| PhoB | 9-28 | 7.055 |
| IdnR | 231-246 | 6.945 |
| ModE | 227-253 | 6.683 |
| XylR | 90-107 | 6.343 |
| ArgP | 308-320 | 6.225 |
| Nac | 363-377 | 6.224 |
| UlaR | 286-305 | 6.017 |
| FruR | 199-216 | 5.983 |
| FadR | 143-159 | 5.859 |
| NagC | 225-247 | 5.793 |
| Rob | 104-124 | 5.732 |
| MalT | 101-110 | 5.661 |
| CpxR | 186-200 | 5.627 |
| DeoR | 226-241 | 5.454 |
| NarL | 15-21 | 5.435 |
| AraC | 114-131 | 5.340 |
| GadE | 179-198 | 5.254 |