| TF name | Position | PWM scan score |
| ArcA | 247-307 | 12.834 |
| OmpR | 283-302 | 12.779 |
| Fis | 320-340 | 12.514 |
| GntR | 114-133 | 9.759 |
| GadE | 276-295 | 9.697 |
| DeoR | 181-196 | 8.625 |
| IHF | 350-362 | 8.291 |
| H-NS | 272-286 | 8.227 |
| AraC | 370-387 | 8.153 |
| LacI | 379-399 | 8.147 |
| UlaR | 307-326 | 7.723 |
| Ada | 256-283 | 7.566 |
| CRP | 347-368 | 7.383 |
| NarL | 380-386 | 7.310 |
| Nac | 272-286 | 7.212 |
| GlpR | 217-236 | 7.158 |
| MelR | 67-84 | 7.152 |
| PhoP | 348-364 | 6.836 |
| Lrp | 325-336 | 6.822 |
| XylR | 374-391 | 6.728 |
| ArgP | 219-231 | 6.611 |
| LexA | 273-292 | 6.523 |
| ArgR | 297-312 | 6.404 |
| DnaA | 187-195 | 6.340 |
| CpxR | 290-304 | 6.319 |
| CytR | 352-391 | 6.255 |
| PspF | 350-366 | 6.185 |
| FadR | 41-57 | 6.144 |
| FNR | 182-203 | 6.070 |
| FruR | 208-225 | 5.864 |
| RcsB | 351-364 | 5.607 |
| NagC | 275-297 | 5.261 |
| Rob | 244-264 | 5.203 |