| TF name | Position | PWM scan score |
| CpxR | 369-383 | 10.735 |
| TorR | 124-133 | 10.184 |
| CRP | 244-265 | 9.372 |
| ArgR | 209-224 | 9.065 |
| RcsB | 366-379 | 9.038 |
| AgaR | 321-344 | 8.772 |
| Fis | 300-320 | 8.683 |
| H-NS | 211-225 | 8.552 |
| ArcA | 297-357 | 8.156 |
| GntR | 177-196 | 8.068 |
| Lrp | 380-391 | 7.463 |
| GcvA | 146-174 | 7.443 |
| RhaS | 247-263 | 7.334 |
| IHF | 345-357 | 7.288 |
| DnaA | 328-336 | 7.116 |
| SoxS | 201-218 | 7.051 |
| TyrR | 291-312 | 7.000 |
| Mlc | 307-329 | 6.761 |
| Nac | 245-259 | 6.737 |
| Ada | 365-392 | 6.685 |
| FNR | 336-357 | 6.583 |
| UxuR | 323-340 | 6.561 |
| Rob | 332-352 | 6.483 |
| MelR | 260-277 | 6.335 |
| NarL | 286-292 | 6.332 |
| AraC | 168-185 | 6.239 |
| ArgP | 379-391 | 6.032 |
| PhoB | 213-232 | 5.935 |
| PurR | 293-308 | 5.659 |
| LacI | 115-135 | 5.631 |
| NarP | 65-71 | 5.557 |
| MalT | 372-381 | 5.523 |
| PhoP | 320-336 | 5.485 |
| NtrC | 320-336 | 5.427 |
| IdnR | 357-372 | 5.394 |
| NorR | 328-344 | 5.268 |
| GlpR | 246-265 | 5.168 |
| NagC | 353-375 | 5.086 |
| FruR | 54-71 | 5.048 |