| TF name | Position | PWM scan score |
| MetJ | 212-219 | 11.792 |
| OmpR | 283-302 | 10.752 |
| RcsB | 272-285 | 10.431 |
| UlaR | 157-176 | 10.008 |
| Fur | 372-386 | 9.880 |
| Ada | 127-154 | 9.331 |
| IdnR | 364-379 | 9.323 |
| ArgP | 111-123 | 8.795 |
| GntR | 143-162 | 8.236 |
| AraC | 220-237 | 8.058 |
| MelR | 216-233 | 7.461 |
| MalT | 243-252 | 7.344 |
| NarP | 314-320 | 7.302 |
| Nac | 381-395 | 7.123 |
| NarL | 319-325 | 7.107 |
| Mlc | 276-298 | 6.990 |
| GadE | 286-305 | 6.858 |
| Lrp | 377-388 | 6.471 |
| CRP | 257-278 | 6.457 |
| Fis | 372-392 | 6.397 |
| RhaS | 17-33 | 6.389 |
| MetR | 150-173 | 6.107 |
| SoxS | 113-130 | 5.922 |
| H-NS | 110-124 | 5.399 |
| DeoR | 349-364 | 5.388 |
| MarA | 16-36 | 5.324 |
| TyrR | 106-127 | 5.184 |
| XylR | 210-227 | 5.172 |
| FNR | 286-307 | 5.094 |