| TF name | Position | PWM scan score |
| SoxS | 374-391 | 13.121 |
| RcsB | 258-271 | 10.535 |
| TorR | 318-327 | 9.505 |
| RhaS | 240-256 | 9.443 |
| H-NS | 206-220 | 9.223 |
| Lrp | 40-51 | 8.833 |
| AraC | 37-54 | 8.763 |
| MarA | 357-377 | 8.422 |
| NarP | 123-129 | 8.308 |
| FruR | 52-69 | 8.282 |
| UxuR | 316-333 | 8.201 |
| Nac | 193-207 | 8.159 |
| PhoB | 206-225 | 7.435 |
| LexA | 213-232 | 7.264 |
| NorR | 226-242 | 7.141 |
| IHF | 157-169 | 7.039 |
| NarL | 202-208 | 6.944 |
| OmpR | 203-222 | 6.772 |
| DnaA | 317-325 | 6.730 |
| MalT | 51-60 | 6.697 |
| PhoP | 374-390 | 6.123 |
| GadE | 110-129 | 6.041 |
| GntR | 218-237 | 5.990 |
| TyrR | 35-56 | 5.898 |
| AgaR | 149-172 | 5.733 |
| ArgP | 211-223 | 5.599 |
| Rob | 379-399 | 5.588 |
| Fur | 258-272 | 5.359 |
| Fis | 362-382 | 5.358 |
| MetJ | 281-288 | 5.316 |
| UlaR | 257-276 | 5.162 |