| TF name | Position | PWM scan score |
| TorR | 347-356 | 14.113 |
| XylR | 372-389 | 12.771 |
| MetR | 201-224 | 12.264 |
| Rob | 331-351 | 11.861 |
| TyrR | 348-369 | 10.868 |
| OmpR | 352-371 | 10.767 |
| MarA | 319-339 | 10.606 |
| UlaR | 368-387 | 10.206 |
| SoxS | 82-99 | 9.578 |
| NtrC | 314-330 | 9.550 |
| CueR | 99-117 | 9.269 |
| GntR | 378-397 | 8.708 |
| IHF | 373-385 | 8.103 |
| AgaR | 366-389 | 8.015 |
| GcvA | 350-378 | 8.011 |
| NarL | 213-219 | 7.740 |
| H-NS | 318-332 | 7.570 |
| RhaS | 226-242 | 7.408 |
| NorR | 376-392 | 7.232 |
| IdnR | 379-394 | 7.123 |
| Nac | 352-366 | 7.063 |
| Lrp | 184-195 | 6.942 |
| PhoP | 161-177 | 6.773 |
| ModE | 354-380 | 6.701 |
| NarP | 218-224 | 6.524 |
| ArgP | 378-390 | 6.489 |
| LexA | 355-374 | 6.249 |
| FNR | 354-375 | 6.085 |
| DeoR | 382-397 | 6.023 |
| CRP | 159-180 | 5.827 |
| ArgR | 327-342 | 5.764 |
| GlpR | 318-337 | 5.621 |
| MelR | 300-317 | 5.398 |
| RcsB | 274-287 | 5.304 |
| CpxR | 363-377 | 5.161 |
| ArcA | 331-391 | 5.158 |
| UxuR | 167-184 | 5.097 |
| AraC | 234-251 | 5.037 |