| TF name | Position | PWM scan score |
| H-NS | 383-397 | 9.405 |
| PhoP | 99-115 | 9.211 |
| ArgP | 132-144 | 8.951 |
| CueR | 23-41 | 8.906 |
| NtrC | 25-41 | 8.905 |
| RcsB | 72-85 | 8.862 |
| NarL | 73-79 | 8.353 |
| ArcA | 333-393 | 8.241 |
| Fis | 1-21 | 7.395 |
| SoxS | 26-43 | 6.848 |
| XylR | 180-197 | 6.619 |
| IHF | 101-113 | 6.252 |
| CysB | 1-42 | 6.251 |
| Rob | 25-45 | 6.115 |
| CRP | 188-209 | 5.998 |
| GalS | 74-89 | 5.919 |
| GalR | 74-89 | 5.919 |
| FadR | 58-74 | 5.887 |
| PspF | 358-374 | 5.395 |
| OmpR | 370-389 | 5.318 |
| LexA | 130-149 | 5.277 |
| ArgR | 70-85 | 5.246 |
| LacI | 150-170 | 5.015 |