| TF name | Position | PWM scan score |
| OxyR | 280-324 | 13.035 |
| UlaR | 9-28 | 11.326 |
| MetJ | 25-32 | 11.198 |
| NorR | 296-312 | 11.149 |
| MarA | 96-116 | 10.518 |
| RhaS | 88-104 | 9.904 |
| FruR | 299-316 | 9.900 |
| AraC | 162-179 | 9.327 |
| SoxS | 156-173 | 9.282 |
| Lrp | 359-370 | 8.722 |
| DnaA | 347-355 | 8.669 |
| GadE | 293-312 | 8.651 |
| GlpR | 191-210 | 8.617 |
| Fis | 337-357 | 8.548 |
| FadR | 262-278 | 8.265 |
| IHF | 298-310 | 8.245 |
| GntR | 30-49 | 8.016 |
| GcvA | 246-274 | 7.981 |
| GalR | 298-313 | 7.814 |
| GalS | 298-313 | 7.814 |
| H-NS | 189-203 | 7.601 |
| LacI | 132-152 | 7.587 |
| DeoR | 99-114 | 7.466 |
| Nac | 20-34 | 7.399 |
| CysB | 270-311 | 6.873 |
| NarL | 296-302 | 6.718 |
| TorR | 251-260 | 5.970 |
| ArcA | 320-380 | 5.945 |
| ArgR | 290-305 | 5.915 |
| NarP | 252-258 | 5.765 |
| Fur | 297-311 | 5.696 |
| PspF | 294-310 | 5.652 |
| MalT | 184-193 | 5.608 |
| FNR | 33-54 | 5.502 |
| PhoP | 281-297 | 5.444 |
| Ada | 171-198 | 5.186 |
| OmpR | 289-308 | 5.029 |