| TF name | Position | PWM scan score |
| MarA | 64-84 | 12.984 |
| DeoR | 226-241 | 11.733 |
| IHF | 372-384 | 10.553 |
| Ada | 17-44 | 10.208 |
| CRP | 330-351 | 9.889 |
| SoxS | 225-242 | 9.721 |
| ArcA | 339-399 | 9.262 |
| ArgR | 67-82 | 8.858 |
| GalR | 326-341 | 8.858 |
| GalS | 326-341 | 8.858 |
| DnaA | 143-151 | 8.624 |
| GlpR | 230-249 | 7.914 |
| Fis | 331-351 | 7.905 |
| TorR | 39-48 | 7.835 |
| NarL | 139-145 | 7.577 |
| FNR | 363-384 | 7.461 |
| RhaS | 15-31 | 7.390 |
| Rob | 7-27 | 7.172 |
| OmpR | 347-366 | 7.151 |
| MetJ | 217-224 | 7.013 |
| NorR | 65-81 | 6.925 |
| PhoP | 135-151 | 6.894 |
| H-NS | 362-376 | 6.810 |
| NarP | 184-190 | 6.703 |
| PhoB | 260-279 | 6.500 |
| Lrp | 374-385 | 6.276 |
| Nac | 98-112 | 5.925 |
| LacI | 99-119 | 5.899 |
| GntR | 334-353 | 5.820 |
| UxuR | 68-85 | 5.744 |
| PspF | 219-235 | 5.478 |
| AgaR | 188-211 | 5.419 |
| AraC | 162-179 | 5.391 |
| LexA | 274-293 | 5.308 |
| CueR | 54-72 | 5.246 |
| MalT | 363-372 | 5.216 |
| CytR | 209-248 | 5.174 |
| XylR | 134-151 | 5.096 |