| TF name | Position | PWM scan score |
| IHF | 300-312 | 10.797 |
| GlpR | 146-165 | 10.677 |
| FNR | 147-168 | 9.395 |
| AgaR | 292-315 | 8.584 |
| ArgP | 384-396 | 8.349 |
| NarP | 392-398 | 8.118 |
| PhoB | 368-387 | 7.799 |
| LacI | 379-399 | 7.295 |
| AraC | 196-213 | 7.227 |
| Nac | 359-373 | 7.039 |
| Lrp | 150-161 | 6.806 |
| PhoP | 365-381 | 6.709 |
| Rob | 153-173 | 6.397 |
| NarL | 191-197 | 6.169 |
| MalT | 35-44 | 6.044 |
| TyrR | 198-219 | 5.615 |
| MetR | 82-105 | 5.298 |
| XylR | 374-391 | 5.194 |
| DnaA | 362-370 | 5.140 |