| TF name | Position | PWM scan score |
| IHF | 316-328 | 10.678 |
| MetR | 263-286 | 10.350 |
| XylR | 305-322 | 9.706 |
| MalT | 59-68 | 9.567 |
| Rob | 306-326 | 9.555 |
| FadR | 72-88 | 9.499 |
| CpxR | 111-125 | 9.362 |
| AgaR | 297-320 | 9.067 |
| DnaA | 47-55 | 8.868 |
| LexA | 39-58 | 8.752 |
| FNR | 285-306 | 8.529 |
| IdnR | 291-306 | 8.417 |
| H-NS | 298-312 | 8.344 |
| GadE | 283-302 | 8.098 |
| AraC | 292-309 | 7.952 |
| ArcA | 282-342 | 7.930 |
| ArgP | 26-38 | 7.423 |
| NarP | 277-283 | 7.377 |
| DeoR | 19-34 | 7.219 |
| PhoB | 299-318 | 7.168 |
| PspF | 379-395 | 7.137 |
| CueR | 118-136 | 6.714 |
| Nac | 23-37 | 6.653 |
| Lrp | 21-32 | 6.628 |
| TyrR | 304-325 | 6.490 |
| TorR | 230-239 | 6.437 |
| MarA | 98-118 | 6.346 |
| FruR | 110-127 | 6.308 |
| RcsB | 7-20 | 5.967 |
| FhlA | 224-263 | 5.809 |
| NagC | 283-305 | 5.618 |
| Fis | 7-27 | 5.589 |
| RhaS | 25-41 | 5.492 |
| GcvA | 108-136 | 5.364 |
| UlaR | 302-321 | 5.225 |
| GntR | 112-131 | 5.217 |
| CRP | 253-274 | 5.213 |
| PurR | 110-125 | 5.208 |
| Mlc | 119-141 | 5.194 |
| Ada | 296-323 | 5.101 |