| TF name | Position | PWM scan score |
| ArcA | 27-87 | 13.605 |
| ModE | 40-66 | 11.666 |
| TorR | 341-350 | 11.662 |
| PspF | 121-137 | 10.838 |
| GcvA | 46-74 | 10.200 |
| RcsB | 62-75 | 10.166 |
| OmpR | 38-57 | 9.997 |
| H-NS | 51-65 | 9.736 |
| Nac | 191-205 | 9.052 |
| MetR | 73-96 | 8.686 |
| IHF | 57-69 | 8.353 |
| TyrR | 47-68 | 7.671 |
| Lrp | 189-200 | 7.580 |
| ArgR | 212-227 | 7.391 |
| GadE | 71-90 | 7.194 |
| PurR | 102-117 | 7.170 |
| NarL | 123-129 | 7.080 |
| UlaR | 243-262 | 7.061 |
| Rob | 345-365 | 7.051 |
| CpxR | 243-257 | 6.802 |
| AraC | 153-170 | 6.462 |
| PhoB | 373-392 | 6.458 |
| Fis | 339-359 | 6.308 |
| NorR | 334-350 | 6.120 |
| OxyR | 312-356 | 6.028 |
| DeoR | 69-84 | 5.953 |
| FNR | 66-87 | 5.873 |
| LexA | 312-331 | 5.791 |
| ArgP | 191-203 | 5.650 |
| GntR | 60-79 | 5.534 |
| XylR | 47-64 | 5.508 |
| DnaA | 340-348 | 5.436 |
| NagC | 231-253 | 5.424 |
| GalS | 35-50 | 5.351 |
| GalR | 35-50 | 5.351 |
| FruR | 380-397 | 5.120 |
| Mlc | 31-53 | 5.072 |
| CytR | 50-89 | 5.047 |