| TF name | Position | PWM scan score |
| NagC | 37-59 | 13.034 |
| Mlc | 35-57 | 13.002 |
| ArgP | 385-397 | 12.475 |
| Fis | 372-392 | 10.303 |
| IHF | 61-73 | 10.096 |
| FNR | 345-366 | 9.346 |
| ArcA | 31-91 | 9.189 |
| Rob | 300-320 | 9.109 |
| PurR | 109-124 | 8.786 |
| DeoR | 77-92 | 8.627 |
| Nac | 239-253 | 8.501 |
| H-NS | 50-64 | 8.439 |
| RcsB | 337-350 | 8.233 |
| PhoB | 352-371 | 7.943 |
| ArgR | 49-64 | 7.891 |
| GalS | 248-263 | 7.698 |
| GalR | 248-263 | 7.698 |
| Lrp | 67-78 | 7.538 |
| CRP | 16-37 | 7.338 |
| NarL | 230-236 | 7.309 |
| PspF | 228-244 | 7.190 |
| PhoP | 366-382 | 7.122 |
| MelR | 25-42 | 6.790 |
| OmpR | 368-387 | 6.745 |
| CpxR | 368-382 | 6.669 |
| GadE | 15-34 | 6.374 |
| DnaA | 173-181 | 6.355 |
| IdnR | 379-394 | 6.267 |
| MarA | 11-31 | 6.265 |
| MetJ | 351-358 | 5.856 |
| TorR | 367-376 | 5.844 |
| AraC | 28-45 | 5.778 |
| FruR | 375-392 | 5.771 |
| NarP | 368-374 | 5.765 |
| XylR | 290-307 | 5.554 |
| GntR | 370-389 | 5.192 |
| CueR | 219-237 | 5.180 |