| TF name | Position | PWM scan score |
| PhoP | 274-290 | 15.335 |
| TorR | 225-234 | 11.877 |
| Nac | 95-109 | 11.097 |
| UlaR | 103-122 | 10.580 |
| RhaS | 58-74 | 9.590 |
| FNR | 269-290 | 9.505 |
| NtrC | 28-44 | 8.723 |
| CRP | 19-40 | 8.662 |
| NarP | 353-359 | 8.308 |
| CpxR | 276-290 | 7.880 |
| Fis | 204-224 | 7.676 |
| NarL | 294-300 | 7.336 |
| MalT | 357-366 | 7.186 |
| MarA | 2-22 | 7.066 |
| Lrp | 33-44 | 7.019 |
| AraC | 222-239 | 6.801 |
| Ada | 255-282 | 6.465 |
| PspF | 357-373 | 6.334 |
| DeoR | 310-325 | 6.327 |
| IHF | 217-229 | 6.194 |
| NorR | 263-279 | 6.120 |
| ArgP | 147-159 | 6.101 |
| MetJ | 100-107 | 5.700 |
| H-NS | 148-162 | 5.474 |
| Fur | 315-329 | 5.350 |
| GalR | 199-214 | 5.296 |
| GalS | 199-214 | 5.296 |
| SoxS | 198-215 | 5.235 |
| UxuR | 247-264 | 5.153 |
| FadR | 75-91 | 5.127 |
| XylR | 265-282 | 5.121 |