| TF name | Position | PWM scan score |
| CpxR | 164-178 | 13.451 |
| NorR | 333-349 | 10.888 |
| NtrC | 79-95 | 10.590 |
| ArgP | 77-89 | 9.716 |
| LacI | 264-284 | 9.119 |
| TorR | 288-297 | 9.065 |
| PspF | 12-28 | 9.019 |
| Fis | 75-95 | 8.656 |
| DnaA | 256-264 | 8.482 |
| DeoR | 4-19 | 8.411 |
| Mlc | 145-167 | 8.244 |
| Nac | 287-301 | 7.917 |
| IHF | 85-97 | 7.533 |
| NarP | 316-322 | 7.426 |
| NarL | 132-138 | 7.309 |
| Rob | 6-26 | 7.120 |
| Lrp | 99-110 | 7.069 |
| PhoB | 8-27 | 6.987 |
| FruR | 331-348 | 6.763 |
| MalT | 244-253 | 6.673 |
| MarA | 201-221 | 6.627 |
| TyrR | 279-300 | 6.218 |
| ArgR | 256-271 | 5.780 |
| ArcA | 28-88 | 5.602 |
| AraC | 59-76 | 5.538 |
| MetR | 91-114 | 5.372 |
| UxuR | 21-38 | 5.323 |
| H-NS | 53-67 | 5.230 |
| OmpR | 38-57 | 5.140 |
| PurR | 23-38 | 5.091 |
| UlaR | 263-282 | 5.043 |
| XylR | 220-237 | 5.025 |