| TF name | Position | PWM scan score |
| NarP | 169-175 | 9.938 |
| MetR | 3-26 | 8.880 |
| MetJ | 145-152 | 7.980 |
| UxuR | 161-178 | 7.768 |
| Lrp | 79-90 | 7.760 |
| XylR | 75-92 | 7.552 |
| AraC | 152-169 | 7.547 |
| RcsB | 300-313 | 7.517 |
| LacI | 240-260 | 7.141 |
| ArgP | 78-90 | 7.109 |
| RhaS | 275-291 | 6.852 |
| SoxS | 20-37 | 6.562 |
| TorR | 76-85 | 6.531 |
| NorR | 72-88 | 6.211 |
| NarL | 387-393 | 6.169 |
| CytR | 359-398 | 6.105 |
| DnaA | 299-307 | 6.048 |
| GalS | 218-233 | 5.989 |
| GalR | 218-233 | 5.989 |
| H-NS | 25-39 | 5.947 |
| FruR | 165-182 | 5.840 |
| MalT | 260-269 | 5.525 |
| Fis | 26-46 | 5.470 |
| IdnR | 74-89 | 5.415 |
| Nac | 280-294 | 5.129 |