| TF name | Position | PWM scan score |
| IHF | 383-395 | 12.478 |
| AraC | 143-160 | 11.329 |
| ArgR | 120-135 | 11.215 |
| FNR | 311-332 | 11.034 |
| ArcA | 125-185 | 10.604 |
| GadE | 281-300 | 9.688 |
| OmpR | 371-390 | 9.183 |
| H-NS | 126-140 | 9.156 |
| CRP | 308-329 | 8.892 |
| Nac | 148-162 | 8.723 |
| Fis | 370-390 | 8.593 |
| NarP | 328-334 | 8.154 |
| ArgP | 204-216 | 7.796 |
| PhoP | 136-152 | 7.769 |
| XylR | 363-380 | 7.730 |
| Lrp | 178-189 | 7.186 |
| GlpR | 148-167 | 7.030 |
| Ada | 126-153 | 6.879 |
| DnaA | 18-26 | 6.819 |
| PurR | 7-22 | 6.758 |
| CpxR | 11-25 | 6.684 |
| FadR | 36-52 | 6.559 |
| NarL | 157-163 | 6.515 |
| SoxS | 137-154 | 6.452 |
| DeoR | 336-351 | 6.366 |
| OxyR | 24-68 | 6.346 |
| Fur | 99-113 | 6.331 |
| MetJ | 143-150 | 6.318 |
| MarA | 194-214 | 6.222 |
| CysB | 122-163 | 6.197 |
| MalT | 245-254 | 6.177 |
| PhoB | 150-169 | 6.084 |
| Rob | 197-217 | 6.057 |
| TorR | 149-158 | 5.837 |
| RcsB | 358-371 | 5.506 |
| IdnR | 231-246 | 5.431 |
| GcvA | 143-171 | 5.333 |
| TyrR | 332-353 | 5.293 |
| AgaR | 88-111 | 5.277 |
| ModE | 149-175 | 5.260 |