| TF name | Position | PWM scan score |
| GntR | 81-100 | 10.583 |
| PhoB | 27-46 | 10.397 |
| LexA | 45-64 | 10.300 |
| ArgP | 35-47 | 10.251 |
| XylR | 38-55 | 9.095 |
| FNR | 145-166 | 8.781 |
| CytR | 311-350 | 8.682 |
| MetJ | 167-174 | 8.612 |
| Ada | 320-347 | 8.493 |
| Nac | 333-347 | 8.362 |
| TorR | 340-349 | 8.339 |
| ArcA | 324-384 | 8.305 |
| DnaA | 345-353 | 8.003 |
| GadE | 368-387 | 7.937 |
| Rob | 147-167 | 7.590 |
| Fis | 369-389 | 7.572 |
| OmpR | 14-33 | 7.402 |
| H-NS | 279-293 | 7.211 |
| NarL | 228-234 | 7.107 |
| IHF | 329-341 | 7.031 |
| MetR | 266-289 | 6.989 |
| DeoR | 48-63 | 6.736 |
| AraC | 165-182 | 6.686 |
| UlaR | 157-176 | 6.673 |
| SoxS | 63-80 | 6.379 |
| CRP | 142-163 | 6.298 |
| AgaR | 152-175 | 6.290 |
| Lrp | 334-345 | 6.130 |
| RcsB | 376-389 | 6.102 |
| PhoP | 327-343 | 6.043 |
| Mlc | 316-338 | 6.039 |
| MarA | 61-81 | 5.998 |
| CpxR | 32-46 | 5.943 |
| CysB | 341-382 | 5.578 |
| ArgR | 272-287 | 5.527 |
| GlpR | 364-383 | 5.339 |
| MalT | 144-153 | 5.200 |
| LacI | 341-361 | 5.036 |