| TF name | Position | PWM scan score |
| NagC | 216-238 | 11.959 |
| GntR | 308-327 | 10.583 |
| CytR | 200-239 | 10.540 |
| PhoB | 254-273 | 10.397 |
| LexA | 272-291 | 10.300 |
| ArgP | 262-274 | 10.251 |
| IHF | 209-221 | 9.917 |
| Nac | 145-159 | 9.752 |
| CysB | 129-170 | 9.588 |
| GadE | 181-200 | 9.588 |
| XylR | 265-282 | 9.095 |
| NarP | 197-203 | 8.841 |
| FNR | 372-393 | 8.781 |
| PspF | 6-22 | 8.476 |
| MelR | 206-223 | 8.274 |
| Rob | 209-229 | 8.197 |
| CueR | 42-60 | 8.141 |
| H-NS | 156-170 | 8.134 |
| TorR | 222-231 | 7.650 |
| CRP | 174-195 | 7.487 |
| OmpR | 241-260 | 7.402 |
| MarA | 75-95 | 7.318 |
| MalT | 201-210 | 7.200 |
| Fis | 178-198 | 6.919 |
| NarL | 164-170 | 6.880 |
| DeoR | 275-290 | 6.736 |
| Ada | 359-386 | 6.726 |
| NorR | 52-68 | 6.641 |
| SoxS | 290-307 | 6.379 |
| RcsB | 99-112 | 6.320 |
| ArcA | 78-138 | 6.057 |
| UlaR | 56-75 | 5.999 |
| CpxR | 259-273 | 5.943 |
| GcvA | 227-255 | 5.692 |
| TyrR | 206-227 | 5.581 |
| GalR | 93-108 | 5.457 |
| GalS | 93-108 | 5.457 |
| Lrp | 143-154 | 5.388 |