| TF name | Position | PWM scan score |
| ArcA | 305-365 | 15.308 |
| CpxR | 91-105 | 12.375 |
| TyrR | 274-295 | 11.811 |
| OmpR | 318-337 | 11.070 |
| Lrp | 318-329 | 10.566 |
| H-NS | 330-344 | 9.261 |
| OxyR | 325-369 | 9.212 |
| TorR | 213-222 | 8.955 |
| GadE | 280-299 | 8.636 |
| ArgP | 330-342 | 8.425 |
| XylR | 328-345 | 8.094 |
| DnaA | 13-21 | 8.003 |
| IHF | 325-337 | 7.949 |
| MetJ | 26-33 | 7.907 |
| Nac | 317-331 | 7.882 |
| FruR | 232-249 | 7.107 |
| MarA | 97-117 | 7.034 |
| NtrC | 18-34 | 6.976 |
| ArgR | 376-391 | 6.969 |
| AgaR | 371-394 | 6.920 |
| RcsB | 331-344 | 6.755 |
| MalT | 341-350 | 6.751 |
| CRP | 122-143 | 6.744 |
| AraC | 325-342 | 6.719 |
| GlpR | 219-238 | 6.708 |
| PhoB | 223-242 | 6.621 |
| NarP | 343-349 | 6.598 |
| FNR | 316-337 | 6.527 |
| RhaS | 336-352 | 6.398 |
| NagC | 376-398 | 6.204 |
| NarL | 392-398 | 6.038 |
| PspF | 318-334 | 5.896 |
| Fis | 322-342 | 5.519 |
| CysB | 281-322 | 5.249 |
| DeoR | 325-340 | 5.117 |
| SoxS | 80-97 | 5.025 |